Human Nav1.7-VSD4-NavAb in complex with GX-936
Organism: Arcobacter butzleri
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00520
PDB ID: 5EK0
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.7 Å
Number of TM segments = 24
Sequence positions:
A: 19-37|48-66|79-97|113-129|146-164|211-230
C: 508-526|539-558|569-587|600-617|633-653|696-716
B: 266-282|293-311|325-343|358-374|391-409|455-474
D: 750-768|781-801|811-829|842-858|875-893|939-958
Tilt angles:
A - Segment: 19-37 - Tilt: 22.7°
A - Segment: 48-66 - Tilt: 24.3°
A - Segment: 79-97 - Tilt: 16.6°
A - Segment: 113-129 - Tilt: 28.0°
A - Segment: 146-164 - Tilt: 27.6°
A - Segment: 211-230 - Tilt: 31.1°
C - Segment: 508-526 - Tilt: 22.3°
C - Segment: 539-558 - Tilt: 28.7°
C - Segment: 569-587 - Tilt: 13.4°
C - Segment: 600-617 - Tilt: 28.8°
C - Segment: 633-653 - Tilt: 34.1°
C - Segment: 696-716 - Tilt: 40.5°
B - Segment: 266-282 - Tilt: 17.6°
B - Segment: 293-311 - Tilt: 21.5°
B - Segment: 325-343 - Tilt: 13.4°
B - Segment: 358-374 - Tilt: 29.7°
B - Segment: 391-409 - Tilt: 27.2°
B - Segment: 455-474 - Tilt: 34.3°
D - Segment: 750-768 - Tilt: 23.5°
D - Segment: 781-801 - Tilt: 30.8°
D - Segment: 811-829 - Tilt: 12.9°
D - Segment: 842-858 - Tilt: 28.7°
D - Segment: 875-893 - Tilt: 29.3°
D - Segment: 939-958 - Tilt: 36.8°
Structural assessment:
MAIDEN score = -250.8515
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]