Transmembrane protein Vc569
Organism: Ciona intestinalis
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: A4ZW71
Pfam Acc: PF00008
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 19.8 Å
Number of TM segments = 7
Sequence positions:
: 85-100|112-127|164-181|205-222|224-238|345-371|378-414
Tilt angles:
- Segment: 85-100 - Tilt: 38.6°
- Segment: 112-127 - Tilt: 30.6°
- Segment: 164-181 - Tilt: 48.9°
- Segment: 205-222 - Tilt: 54.2°
- Segment: 224-238 - Tilt: 30.1°
- Segment: 345-371 - Tilt: 55.8°
- Segment: 378-414 - Tilt: 71.1°
Structural assessment:
MAIDEN score = 46.8269
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]