Transmembrane agrin
Organism: Danio rerio
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: B3GQ71
Pfam Acc: PF00008
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 6
Sequence positions:
: 1529-1534|1547-1554|1611-1640|1647-1670|1673-1687|1689-1699
Tilt angles:
- Segment: 1529-1534 - Tilt: 24.9°
- Segment: 1547-1554 - Tilt: 31.2°
- Segment: 1611-1640 - Tilt: 52.5°
- Segment: 1647-1670 - Tilt: 21.8°
- Segment: 1673-1687 - Tilt: 21.0°
- Segment: 1689-1699 - Tilt: 19.6°
Structural assessment:
MAIDEN score = 40.1573
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]