Transmembrane protein
Organism: Polysphondylium pallidum
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: D3BDG1
Pfam Acc: PF00153
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 32.0 Å
Number of TM segments = 6
Sequence positions:
: 12-39|62-89|106-135|157-182|239-262|287-313
Tilt angles:
- Segment: 12-39 - Tilt: 29.2°
- Segment: 62-89 - Tilt: 44.8°
- Segment: 106-135 - Tilt: 44.8°
- Segment: 157-182 - Tilt: 42.7°
- Segment: 239-262 - Tilt: 20.7°
- Segment: 287-313 - Tilt: 48.1°
Structural assessment:
MAIDEN score = -44.6700
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]