Cbb3-type cytochrome c oxidase, subunit I transmembrane protein
Organism: Herbaspirillum seropedicae
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: D8J1B6
Pfam Acc: PF00115
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 11
Sequence positions:
: 44-53|64-83|132-146|159-172|202-215|245-256|265-278|314-331|338-357|385-399|433-450
Tilt angles:
- Segment: 44-53 - Tilt: 41.2°
- Segment: 64-83 - Tilt: 39.5°
- Segment: 132-146 - Tilt: 32.1°
- Segment: 159-172 - Tilt: 20.1°
- Segment: 202-215 - Tilt: 34.2°
- Segment: 245-256 - Tilt: 24.1°
- Segment: 265-278 - Tilt: 37.4°
- Segment: 314-331 - Tilt: 37.0°
- Segment: 338-357 - Tilt: 40.4°
- Segment: 385-399 - Tilt: 45.7°
- Segment: 433-450 - Tilt: 52.9°
Structural assessment:
MAIDEN score = -6.5230
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]