Cbb3-type cytochrome c oxidase, subunit I transmembrane protein
Organism: Herbaspirillum seropedicae
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: D8J1B6
Pfam Acc: PF00115
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 9
Sequence positions:
: 22-38|48-72|103-124|134-158|178-212|230-255|262-281|311-328|332-348
Tilt angles:
- Segment: 22-38 - Tilt: 39.3°
- Segment: 48-72 - Tilt: 54.1°
- Segment: 103-124 - Tilt: 2.8°
- Segment: 134-158 - Tilt: 58.5°
- Segment: 178-212 - Tilt: 65.6°
- Segment: 230-255 - Tilt: 60.7°
- Segment: 262-281 - Tilt: 53.5°
- Segment: 311-328 - Tilt: 50.6°
- Segment: 332-348 - Tilt: 29.5°
Structural assessment:
MAIDEN score = -81.7207
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]