Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_a
Organism: Mus musculus
Model: Theoretical SWISS-MODEL
Representation: Atomistic
Type: α-helical
UniProtKB AC: G5E8N4
Pfam Acc: PF01403
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 17
Sequence positions:
B: 73-109|123-130|163-174|176-191|198-207|216-221|241-253|257-267|275-280|291-296|306-314|316-322|355-376|384-391|399-405|452-459|461-469
Tilt angles:
B - Segment: 73-109 - Tilt: 54.5°
B - Segment: 123-130 - Tilt: 32.8°
B - Segment: 163-174 - Tilt: 37.7°
B - Segment: 176-191 - Tilt: 32.2°
B - Segment: 198-207 - Tilt: 44.9°
B - Segment: 216-221 - Tilt: 15.8°
B - Segment: 241-253 - Tilt: 58.2°
B - Segment: 257-267 - Tilt: 33.8°
B - Segment: 275-280 - Tilt: 12.1°
B - Segment: 291-296 - Tilt: 15.1°
B - Segment: 306-314 - Tilt: 42.4°
B - Segment: 316-322 - Tilt: 16.2°
B - Segment: 355-376 - Tilt: 65.0°
B - Segment: 384-391 - Tilt: 22.0°
B - Segment: 399-405 - Tilt: 40.2°
B - Segment: 452-459 - Tilt: 31.8°
B - Segment: 461-469 - Tilt: 41.9°
Structural assessment:
MAIDEN score = 99.2529
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]