Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_a
Organism: Mus musculus
Model: Theoretical SWISS-MODEL
Representation: Atomistic
Type: α-helical
UniProtKB AC: G5E8N4
Pfam Acc: PF01403
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 8
Sequence positions:
A: 39-50|196-204|217-223|237-246|321-333|350-370|432-459|461-485
Tilt angles:
A - Segment: 39-50 - Tilt: 28.5°
A - Segment: 196-204 - Tilt: 38.5°
A - Segment: 217-223 - Tilt: 28.3°
A - Segment: 237-246 - Tilt: 42.1°
A - Segment: 321-333 - Tilt: 24.3°
A - Segment: 350-370 - Tilt: 59.5°
A - Segment: 432-459 - Tilt: 27.8°
A - Segment: 461-485 - Tilt: 45.7°
Structural assessment:
MAIDEN score = 73.3493
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]