Transmembrane transport protein
Organism: Rhodopirellula baltica
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: K5E775
Pfam Acc: PF05977
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 11
Sequence positions:
: 74-89|111-127|136-155|173-187|198-213|252-268|284-301|312-326|340-354|378-391|403-419
Tilt angles:
- Segment: 74-89 - Tilt: 16.2°
- Segment: 111-127 - Tilt: 24.6°
- Segment: 136-155 - Tilt: 42.7°
- Segment: 173-187 - Tilt: 19.5°
- Segment: 198-213 - Tilt: 19.6°
- Segment: 252-268 - Tilt: 33.9°
- Segment: 284-301 - Tilt: 39.5°
- Segment: 312-326 - Tilt: 21.9°
- Segment: 340-354 - Tilt: 4.7°
- Segment: 378-391 - Tilt: 8.4°
- Segment: 403-419 - Tilt: 35.4°
Structural assessment:
MAIDEN score = -46.4474
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]