Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.0 Å
Number of TM segments = 11
Sequence positions:
: 11-41|43-64|92-123|164-187|194-217|245-266|275-301|338-364|377-397|401-429|444-464
Tilt angles:
- Segment: 11-41 - Tilt: 30.5°
- Segment: 43-64 - Tilt: 20.3°
- Segment: 92-123 - Tilt: 50.9°
- Segment: 164-187 - Tilt: 27.2°
- Segment: 194-217 - Tilt: 32.2°
- Segment: 245-266 - Tilt: 30.3°
- Segment: 275-301 - Tilt: 30.5°
- Segment: 338-364 - Tilt: 39.6°
- Segment: 377-397 - Tilt: 11.8°
- Segment: 401-429 - Tilt: 44.5°
- Segment: 444-464 - Tilt: 36.8°
Structural assessment:
MAIDEN score = -44.1708
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]