Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.8 Å
Number of TM segments = 11
Sequence positions:
: 12-38|43-64|92-118|166-188|190-217|243-265|278-303|339-364|375-396|402-428|440-465
Tilt angles:
- Segment: 12-38 - Tilt: 21.3°
- Segment: 43-64 - Tilt: 7.4°
- Segment: 92-118 - Tilt: 41.1°
- Segment: 166-188 - Tilt: 34.3°
- Segment: 190-217 - Tilt: 22.0°
- Segment: 243-265 - Tilt: 15.7°
- Segment: 278-303 - Tilt: 37.1°
- Segment: 339-364 - Tilt: 39.8°
- Segment: 375-396 - Tilt: 26.0°
- Segment: 402-428 - Tilt: 28.9°
- Segment: 440-465 - Tilt: 31.0°
Structural assessment:
MAIDEN score = -92.9337
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]