Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.9 Å
Number of TM segments = 11
Sequence positions:
: 15-31|44-58|97-113|171-186|191-215|245-261|287-302|343-360|376-392|407-424|452-466
Tilt angles:
- Segment: 15-31 - Tilt: 22.0°
- Segment: 44-58 - Tilt: 18.5°
- Segment: 97-113 - Tilt: 29.8°
- Segment: 171-186 - Tilt: 16.0°
- Segment: 191-215 - Tilt: 41.7°
- Segment: 245-261 - Tilt: 27.8°
- Segment: 287-302 - Tilt: 25.3°
- Segment: 343-360 - Tilt: 39.6°
- Segment: 376-392 - Tilt: 35.1°
- Segment: 407-424 - Tilt: 21.9°
- Segment: 452-466 - Tilt: 21.4°
Structural assessment:
MAIDEN score = -47.7211
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]