Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.6 Å
Number of TM segments = 11
Sequence positions:
: 18-33|41-56|95-110|175-188|201-238|246-264|289-303|347-366|373-386|409-432|450-466
Tilt angles:
- Segment: 18-33 - Tilt: 31.1°
- Segment: 41-56 - Tilt: 34.9°
- Segment: 95-110 - Tilt: 22.7°
- Segment: 175-188 - Tilt: 16.5°
- Segment: 201-238 - Tilt: 51.9°
- Segment: 246-264 - Tilt: 38.9°
- Segment: 289-303 - Tilt: 8.4°
- Segment: 347-366 - Tilt: 45.5°
- Segment: 373-386 - Tilt: 32.9°
- Segment: 409-432 - Tilt: 35.2°
- Segment: 450-466 - Tilt: 32.2°
Structural assessment:
MAIDEN score = -27.6333
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]