Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 11
Sequence positions:
: 20-33|44-55|101-112|170-182|200-217|247-260|288-301|343-358|379-391|407-418|451-464
Tilt angles:
- Segment: 20-33 - Tilt: 38.3°
- Segment: 44-55 - Tilt: 9.4°
- Segment: 101-112 - Tilt: 14.0°
- Segment: 170-182 - Tilt: 16.7°
- Segment: 200-217 - Tilt: 50.2°
- Segment: 247-260 - Tilt: 26.2°
- Segment: 288-301 - Tilt: 23.9°
- Segment: 343-358 - Tilt: 47.2°
- Segment: 379-391 - Tilt: 6.3°
- Segment: 407-418 - Tilt: 29.0°
- Segment: 451-464 - Tilt: 23.4°
Structural assessment:
MAIDEN score = -39.4677
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]