Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.8 Å
Number of TM segments = 10
Sequence positions:
: 15-29|47-62|100-117|165-179|195-210|246-262|282-299|345-358|383-397|399-420
Tilt angles:
- Segment: 15-29 - Tilt: 36.5°
- Segment: 47-62 - Tilt: 27.0°
- Segment: 100-117 - Tilt: 38.8°
- Segment: 165-179 - Tilt: 39.6°
- Segment: 195-210 - Tilt: 36.4°
- Segment: 246-262 - Tilt: 25.4°
- Segment: 282-299 - Tilt: 48.4°
- Segment: 345-358 - Tilt: 40.1°
- Segment: 383-397 - Tilt: 26.8°
- Segment: 399-420 - Tilt: 33.0°
Structural assessment:
MAIDEN score = -16.3825
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]