Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 11
Sequence positions:
: 21-31|40-55|99-116|170-182|201-216|245-257|290-302|340-356|379-393|403-418|451-466
Tilt angles:
- Segment: 21-31 - Tilt: 25.1°
- Segment: 40-55 - Tilt: 48.1°
- Segment: 99-116 - Tilt: 54.1°
- Segment: 170-182 - Tilt: 14.2°
- Segment: 201-216 - Tilt: 45.1°
- Segment: 245-257 - Tilt: 12.0°
- Segment: 290-302 - Tilt: 28.9°
- Segment: 340-356 - Tilt: 52.9°
- Segment: 379-393 - Tilt: 35.8°
- Segment: 403-418 - Tilt: 46.2°
- Segment: 451-466 - Tilt: 34.6°
Structural assessment:
MAIDEN score = -44.5986
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]