Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 11
Sequence positions:
: 14-29|41-59|106-120|164-176|202-216|247-261|287-297|325-360|380-392|411-441|443-457
Tilt angles:
- Segment: 14-29 - Tilt: 38.1°
- Segment: 41-59 - Tilt: 52.2°
- Segment: 106-120 - Tilt: 50.5°
- Segment: 164-176 - Tilt: 39.3°
- Segment: 202-216 - Tilt: 38.0°
- Segment: 247-261 - Tilt: 34.9°
- Segment: 287-297 - Tilt: 9.1°
- Segment: 325-360 - Tilt: 51.8°
- Segment: 380-392 - Tilt: 20.7°
- Segment: 411-441 - Tilt: 62.4°
- Segment: 443-457 - Tilt: 44.8°
Structural assessment:
MAIDEN score = -21.6235
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]