Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 11
Sequence positions:
: 15-36|46-60|99-116|166-188|190-210|244-262|277-298|345-360|379-396|402-420|449-465
Tilt angles:
- Segment: 15-36 - Tilt: 36.2°
- Segment: 46-60 - Tilt: 10.4°
- Segment: 99-116 - Tilt: 37.4°
- Segment: 166-188 - Tilt: 55.9°
- Segment: 190-210 - Tilt: 20.6°
- Segment: 244-262 - Tilt: 42.8°
- Segment: 277-298 - Tilt: 37.1°
- Segment: 345-360 - Tilt: 12.1°
- Segment: 379-396 - Tilt: 40.0°
- Segment: 402-420 - Tilt: 44.2°
- Segment: 449-465 - Tilt: 21.8°
Structural assessment:
MAIDEN score = -41.5484
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]