Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 11
Sequence positions:
: 19-34|44-54|102-117|165-179|201-215|245-258|288-299|339-356|383-395|401-418|448-462
Tilt angles:
- Segment: 19-34 - Tilt: 33.2°
- Segment: 44-54 - Tilt: 14.6°
- Segment: 102-117 - Tilt: 43.7°
- Segment: 165-179 - Tilt: 34.1°
- Segment: 201-215 - Tilt: 22.5°
- Segment: 245-258 - Tilt: 11.6°
- Segment: 288-299 - Tilt: 28.9°
- Segment: 339-356 - Tilt: 43.0°
- Segment: 383-395 - Tilt: 24.4°
- Segment: 401-418 - Tilt: 53.1°
- Segment: 448-462 - Tilt: 23.4°
Structural assessment:
MAIDEN score = -60.0291
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]