Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 11
Sequence positions:
: 21-33|44-57|103-117|166-179|200-212|246-258|288-299|342-356|382-394|402-417|451-465
Tilt angles:
- Segment: 21-33 - Tilt: 13.2°
- Segment: 44-57 - Tilt: 24.7°
- Segment: 103-117 - Tilt: 45.4°
- Segment: 166-179 - Tilt: 34.2°
- Segment: 200-212 - Tilt: 14.1°
- Segment: 246-258 - Tilt: 35.2°
- Segment: 288-299 - Tilt: 32.6°
- Segment: 342-356 - Tilt: 31.6°
- Segment: 382-394 - Tilt: 2.5°
- Segment: 402-417 - Tilt: 58.3°
- Segment: 451-465 - Tilt: 36.1°
Structural assessment:
MAIDEN score = -52.9700
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]