Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 39.0 Å
Number of TM segments = 9
Sequence positions:
: 11-37|41-64|95-123|161-188|190-218|240-267|271-305|339-364|442-467
Tilt angles:
- Segment: 11-37 - Tilt: 22.3°
- Segment: 41-64 - Tilt: 9.6°
- Segment: 95-123 - Tilt: 35.5°
- Segment: 161-188 - Tilt: 42.9°
- Segment: 190-218 - Tilt: 12.9°
- Segment: 240-267 - Tilt: 26.7°
- Segment: 271-305 - Tilt: 31.5°
- Segment: 339-364 - Tilt: 29.7°
- Segment: 442-467 - Tilt: 26.3°
Structural assessment:
MAIDEN score = -48.0855
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]