Na(+):neurotransmitter symporter (Snf family)
Organism: Aquifex aeolicus
Model: Theoretical
Representation: Atomistic
Type: α-helical
UniProtKB AC: O67854
Pfam Acc: PF00209
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 11
Sequence positions:
: 20-35|46-62|98-120|164-179|202-215|246-259|287-300|338-356|385-395|408-425|440-457
Tilt angles:
- Segment: 20-35 - Tilt: 30.6°
- Segment: 46-62 - Tilt: 37.8°
- Segment: 98-120 - Tilt: 61.9°
- Segment: 164-179 - Tilt: 42.0°
- Segment: 202-215 - Tilt: 31.2°
- Segment: 246-259 - Tilt: 30.8°
- Segment: 287-300 - Tilt: 38.1°
- Segment: 338-356 - Tilt: 54.2°
- Segment: 385-395 - Tilt: 11.0°
- Segment: 408-425 - Tilt: 50.8°
- Segment: 440-457 - Tilt: 47.6°
Structural assessment:
MAIDEN score = -49.5098
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]