Envelope glycoprotein gp160 precursor
Organism: Simian immunodeficiency virus
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: P17281
Pfam Acc: PF00516
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
: 99-111|172-183|191-196|209-221|289-295|328-333|363-376|380-388|396-404|429-436
Tilt angles:
- Segment: 99-111 - Tilt: 27.6°
- Segment: 172-183 - Tilt: 62.6°
- Segment: 191-196 - Tilt: 80.9°
- Segment: 209-221 - Tilt: 51.0°
- Segment: 289-295 - Tilt: 32.8°
- Segment: 328-333 - Tilt: 53.1°
- Segment: 363-376 - Tilt: 44.7°
- Segment: 380-388 - Tilt: 32.6°
- Segment: 396-404 - Tilt: 48.3°
- Segment: 429-436 - Tilt: 23.3°
Structural assessment:
MAIDEN score = 120.0494
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]