Envelope glycoprotein gp160 precursor
Organism: Human immunodeficiency virus type 1 group M subtype D
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: P18799
Pfam Acc: PF00516
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 4
Sequence positions:
: 123-131|194-196|303-310|325-328
Tilt angles:
- Segment: 123-131 - Tilt: 26.7°
- Segment: 194-196 - Tilt: 16.7°
- Segment: 303-310 - Tilt: 40.1°
- Segment: 325-328 - Tilt: 38.1°
Structural assessment:
MAIDEN score = -1.0548
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]