Endogenous retrovirus group PABLB member 1 Env polyprotein precursor
Organism: Homo sapiens
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: P60509
Pfam Acc: PF00429
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 11
Sequence positions:
: 70-86|100-116|159-173|194-208|243-257|284-297|310-323|354-368|378-397|423-440|456-477
Tilt angles:
- Segment: 70-86 - Tilt: 36.4°
- Segment: 100-116 - Tilt: 45.0°
- Segment: 159-173 - Tilt: 34.5°
- Segment: 194-208 - Tilt: 15.6°
- Segment: 243-257 - Tilt: 25.4°
- Segment: 284-297 - Tilt: 26.3°
- Segment: 310-323 - Tilt: 35.2°
- Segment: 354-368 - Tilt: 42.8°
- Segment: 378-397 - Tilt: 39.5°
- Segment: 423-440 - Tilt: 49.4°
- Segment: 456-477 - Tilt: 55.4°
Structural assessment:
MAIDEN score = 58.1375
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]