OmpA-like transmembrane region
Organism: Nitrobacter hamburgensis
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q1QRH0
Pfam Acc: PF13505
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 9
Sequence positions:
: 65-76|80-89|95-102|113-120|135-141|149-155|181-187|198-204|224-230
Tilt angles:
- Segment: 65-76 - Tilt: 59.4°
- Segment: 80-89 - Tilt: 50.0°
- Segment: 95-102 - Tilt: 41.8°
- Segment: 113-120 - Tilt: 29.5°
- Segment: 135-141 - Tilt: 27.5°
- Segment: 149-155 - Tilt: 23.0°
- Segment: 181-187 - Tilt: 19.0°
- Segment: 198-204 - Tilt: 15.0°
- Segment: 224-230 - Tilt: 16.2°
Structural assessment:
MAIDEN score = 24.6655
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]