Putative transmembrane water channel
Organism: Nocardia farcinica
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q5YZZ9
Pfam Acc: PF00230
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.9 Å
Number of TM segments = 6
Sequence positions:
: 16-39|41-63|86-111|152-173|182-219|221-247
Tilt angles:
- Segment: 16-39 - Tilt: 29.5°
- Segment: 41-63 - Tilt: 23.6°
- Segment: 86-111 - Tilt: 43.6°
- Segment: 152-173 - Tilt: 25.2°
- Segment: 182-219 - Tilt: 39.7°
- Segment: 221-247 - Tilt: 39.4°
Structural assessment:
MAIDEN score = -73.5238
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]