Putative transmembrane water channel
Organism: Nocardia farcinica
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q5YZZ9
Pfam Acc: PF00230
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.8 Å
Number of TM segments = 6
Sequence positions:
: 16-39|42-63|89-110|151-170|182-217|221-242
Tilt angles:
- Segment: 16-39 - Tilt: 27.2°
- Segment: 42-63 - Tilt: 19.5°
- Segment: 89-110 - Tilt: 36.1°
- Segment: 151-170 - Tilt: 27.9°
- Segment: 182-217 - Tilt: 41.7°
- Segment: 221-242 - Tilt: 34.0°
Structural assessment:
MAIDEN score = -65.8625
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]