Putative transmembrane water channel
Organism: Nocardia farcinica
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q5YZZ9
Pfam Acc: PF00230
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.2 Å
Number of TM segments = 6
Sequence positions:
: 17-36|41-59|89-112|156-172|184-199|225-246
Tilt angles:
- Segment: 17-36 - Tilt: 35.7°
- Segment: 41-59 - Tilt: 27.3°
- Segment: 89-112 - Tilt: 53.1°
- Segment: 156-172 - Tilt: 20.3°
- Segment: 184-199 - Tilt: 5.7°
- Segment: 225-246 - Tilt: 48.0°
Structural assessment:
MAIDEN score = -53.8569
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]