Envelope glycoprotein gp160 precursor
Organism: Human immunodeficiency virus type 1 group M subtype C
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q75008
Pfam Acc: PF00516
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 8
Sequence positions:
: 53-59|63-80|104-126|207-213|283-291|329-342|355-373|434-442
Tilt angles:
- Segment: 53-59 - Tilt: 18.0°
- Segment: 63-80 - Tilt: 47.8°
- Segment: 104-126 - Tilt: 60.6°
- Segment: 207-213 - Tilt: 35.8°
- Segment: 283-291 - Tilt: 1.8°
- Segment: 329-342 - Tilt: 20.3°
- Segment: 355-373 - Tilt: 56.6°
- Segment: 434-442 - Tilt: 32.0°
Structural assessment:
MAIDEN score = 7.9397
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]