PROBABLE TRANSMEMBRANE TRANSPORT PROTEIN
Organism: Rhizobium loti
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q8KJF7
Pfam Acc: PF05977
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.7 Å
Number of TM segments = 11
Sequence positions:
: 83-107|112-127|147-175|177-194|215-229|262-279|297-313|323-341|349-366|386-405|415-433
Tilt angles:
- Segment: 83-107 - Tilt: 46.9°
- Segment: 112-127 - Tilt: 21.4°
- Segment: 147-175 - Tilt: 59.5°
- Segment: 177-194 - Tilt: 30.6°
- Segment: 215-229 - Tilt: 22.3°
- Segment: 262-279 - Tilt: 13.3°
- Segment: 297-313 - Tilt: 11.2°
- Segment: 323-341 - Tilt: 18.1°
- Segment: 349-366 - Tilt: 16.4°
- Segment: 386-405 - Tilt: 22.0°
- Segment: 415-433 - Tilt: 13.8°
Structural assessment:
MAIDEN score = -37.6982
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]