PROBABLE TRAG CONJUGAL TRANSFER TRANSMEMBRANE PROTEIN
Organism: Rhizobium loti
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q8KJN0
Pfam Acc: PF02534
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 8
Sequence positions:
: 329-342|353-369|374-388|440-453|545-552|589-607|609-618|633-656
Tilt angles:
- Segment: 329-342 - Tilt: 43.6°
- Segment: 353-369 - Tilt: 29.6°
- Segment: 374-388 - Tilt: 20.6°
- Segment: 440-453 - Tilt: 27.4°
- Segment: 545-552 - Tilt: 16.8°
- Segment: 589-607 - Tilt: 69.6°
- Segment: 609-618 - Tilt: 39.4°
- Segment: 633-656 - Tilt: 25.3°
Structural assessment:
MAIDEN score = 0.8029
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]