Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_b
Organism: Rattus norvegicus
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q8R4U4
Pfam Acc: PF01403
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.0 Å
Number of TM segments = 17
Sequence positions:
: 122-130|134-141|144-152|154-170|174-189|195-206|213-220|239-250|252-264|273-279|288-295|353-376|381-389|397-404|433-440|444-451|454-491
Tilt angles:
- Segment: 122-130 - Tilt: 14.8°
- Segment: 134-141 - Tilt: 17.1°
- Segment: 144-152 - Tilt: 39.0°
- Segment: 154-170 - Tilt: 45.0°
- Segment: 174-189 - Tilt: 21.3°
- Segment: 195-206 - Tilt: 40.2°
- Segment: 213-220 - Tilt: 20.2°
- Segment: 239-250 - Tilt: 58.5°
- Segment: 252-264 - Tilt: 42.1°
- Segment: 273-279 - Tilt: 8.4°
- Segment: 288-295 - Tilt: 18.9°
- Segment: 353-376 - Tilt: 61.8°
- Segment: 381-389 - Tilt: 28.9°
- Segment: 397-404 - Tilt: 30.9°
- Segment: 433-440 - Tilt: 12.6°
- Segment: 444-451 - Tilt: 36.6°
- Segment: 454-491 - Tilt: 49.0°
Structural assessment:
MAIDEN score = 163.5887
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]