Envelope glycoprotein gp160 precursor
Organism: Human immunodeficiency virus type 1 group M subtype F2
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q9QBZ0
Pfam Acc: PF00516
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 6
Sequence positions:
: 204-230|301-308|317-323|413-421|428-436|461-485
Tilt angles:
- Segment: 204-230 - Tilt: 63.3°
- Segment: 301-308 - Tilt: 41.9°
- Segment: 317-323 - Tilt: 31.7°
- Segment: 413-421 - Tilt: 29.2°
- Segment: 428-436 - Tilt: 29.4°
- Segment: 461-485 - Tilt: 69.2°
Structural assessment:
MAIDEN score = 23.1923
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]