Envelope glycoprotein gp160 precursor
Organism: Human immunodeficiency virus type 1 group M subtype F1
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q9QSQ7
Pfam Acc: PF00516
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 6
Sequence positions:
: 117-128|183-206|271-282|397-403|408-415|424-451
Tilt angles:
- Segment: 117-128 - Tilt: 50.2°
- Segment: 183-206 - Tilt: 65.4°
- Segment: 271-282 - Tilt: 55.0°
- Segment: 397-403 - Tilt: 3.7°
- Segment: 408-415 - Tilt: 31.4°
- Segment: 424-451 - Tilt: 28.1°
Structural assessment:
MAIDEN score = 48.2290
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]