Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a3c0_PU0_1-16
CI=0.00


[17-141]:
1a3c0_PU0_17-141
CI=5.06


[142-166 ]:
1a3c0_PU0_142-166
CI=2.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a3c0_PU1_1-16
CI=0.00


[17-80]:
1a3c0_PU1_17-80
CI=3.06


[81-141]:
1a3c0_PU1_81-141
CI=4.27


[142-166 ]:
1a3c0_PU1_142-166
CI=2.58


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a3c0_PU2_1-16
CI=0.00


[17-56]:
1a3c0_PU2_17-56
CI=1.69


[57-80]:
1a3c0_PU2_57-80
CI=2.37


[81-141]:
1a3c0_PU2_81-141
CI=4.27


[142-166 ]:
1a3c0_PU2_142-166
CI=2.58


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a3c0_PU3_1-16
CI=0.00


[17-40]:
1a3c0_PU3_17-40
CI=0.68


[41-56]:
1a3c0_PU3_41-56
CI=1.02


[57-80]:
1a3c0_PU3_57-80
CI=2.37


[81-141]:
1a3c0_PU3_81-141
CI=4.27


[142-166 ]:
1a3c0_PU3_142-166
CI=2.58


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1a3c0_PU_1-16
CI=0.00


[17-40]:
1a3c0_PU_17-40
CI=0.68


[41-56]:
1a3c0_PU_41-56
CI=1.02


[57-80]:
1a3c0_PU_57-80
CI=2.37


[81-97]:
1a3c0_PU_81-97
CI=0.00


[98-113]:
1a3c0_PU_98-113
CI=0.11


[114-141]:
1a3c0_PU_114-141
CI=2.44


[142-166 ]:
1a3c0_PU_142-166
CI=2.58