Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU0_1-26
CI=0.22


[27-242 ]:
1agja_PU0_27-242
CI=6.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU1_1-26
CI=0.22


[27-144]:
1agja_PU1_27-144
CI=4.49


[145-231]:
1agja_PU1_145-231
CI=5.57


[232-242 ]:
1agja_PU1_232-242
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU2_1-26
CI=0.22


[27-69]:
1agja_PU2_27-69
CI=1.91


[70-127]:
1agja_PU2_70-127
CI=3.55


[128-144]:
1agja_PU2_128-144
CI=0.32


[145-231]:
1agja_PU2_145-231
CI=5.57


[232-242 ]:
1agja_PU2_232-242
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU3_1-26
CI=0.22


[27-50]:
1agja_PU3_27-50
CI=0.45


[51-69]:
1agja_PU3_51-69
CI=1.17


[70-127]:
1agja_PU3_70-127
CI=3.55


[128-144]:
1agja_PU3_128-144
CI=0.32


[145-231]:
1agja_PU3_145-231
CI=5.57


[232-242 ]:
1agja_PU3_232-242
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU4_1-26
CI=0.22


[27-50]:
1agja_PU4_27-50
CI=0.45


[51-69]:
1agja_PU4_51-69
CI=1.17


[70-110]:
1agja_PU4_70-110
CI=2.33


[111-127]:
1agja_PU4_111-127
CI=1.86


[128-144]:
1agja_PU4_128-144
CI=0.32


[145-231]:
1agja_PU4_145-231
CI=5.57


[232-242 ]:
1agja_PU4_232-242
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU5_1-26
CI=0.22


[27-50]:
1agja_PU5_27-50
CI=0.45


[51-69]:
1agja_PU5_51-69
CI=1.17


[70-87]:
1agja_PU5_70-87
CI=0.51


[88-110]:
1agja_PU5_88-110
CI=1.54


[111-127]:
1agja_PU5_111-127
CI=1.86


[128-144]:
1agja_PU5_128-144
CI=0.32


[145-231]:
1agja_PU5_145-231
CI=5.57


[232-242 ]:
1agja_PU5_232-242
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU6_1-26
CI=0.22


[27-50]:
1agja_PU6_27-50
CI=0.45


[51-69]:
1agja_PU6_51-69
CI=1.17


[70-87]:
1agja_PU6_70-87
CI=0.51


[88-110]:
1agja_PU6_88-110
CI=1.54


[111-127]:
1agja_PU6_111-127
CI=1.86


[128-144]:
1agja_PU6_128-144
CI=0.32


[145-210]:
1agja_PU6_145-210
CI=4.75


[211-231]:
1agja_PU6_211-231
CI=1.89


[232-242 ]:
1agja_PU6_232-242
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU7_1-26
CI=0.22


[27-50]:
1agja_PU7_27-50
CI=0.45


[51-69]:
1agja_PU7_51-69
CI=1.17


[70-87]:
1agja_PU7_70-87
CI=0.51


[88-110]:
1agja_PU7_88-110
CI=1.54


[111-127]:
1agja_PU7_111-127
CI=1.86


[128-144]:
1agja_PU7_128-144
CI=0.32


[145-160]:
1agja_PU7_145-160
CI=0.00


[161-194]:
1agja_PU7_161-194
CI=2.91


[195-210]:
1agja_PU7_195-210
CI=2.54


[211-231]:
1agja_PU7_211-231
CI=1.89


[232-242 ]:
1agja_PU7_232-242
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-26]:
1agja_PU_1-26
CI=0.22


[27-50]:
1agja_PU_27-50
CI=0.45


[51-69]:
1agja_PU_51-69
CI=1.17


[70-87]:
1agja_PU_70-87
CI=0.51


[88-110]:
1agja_PU_88-110
CI=1.54


[111-127]:
1agja_PU_111-127
CI=1.86


[128-144]:
1agja_PU_128-144
CI=0.32


[145-160]:
1agja_PU_145-160
CI=0.00


[161-177]:
1agja_PU_161-177
CI=1.29


[178-194]:
1agja_PU_178-194
CI=0.54


[195-210]:
1agja_PU_195-210
CI=2.54


[211-231]:
1agja_PU_211-231
CI=1.89


[232-242 ]:
1agja_PU_232-242
CI=0.00