Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-109]:
1ako0_PU0_1-109
CI=4.63


[110-268 ]:
1ako0_PU0_110-268
CI=3.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-109]:
1ako0_PU1_1-109
CI=4.63


[110-141]:
1ako0_PU1_110-141
CI=1.12


[142-268 ]:
1ako0_PU1_142-268
CI=4.03


Level 2
PU
Molecule needs Java 1.4 Structure


[1-109]:
1ako0_PU2_1-109
CI=4.63


[110-141]:
1ako0_PU2_110-141
CI=1.12


[142-163]:
1ako0_PU2_142-163
CI=0.17


[164-193]:
1ako0_PU2_164-193
CI=0.37


[194-268 ]:
1ako0_PU2_194-268
CI=3.86


Level 3
PU
Molecule needs Java 1.4 Structure


[1-71]:
1ako0_PU3_1-71
CI=4.19


[72-109]:
1ako0_PU3_72-109
CI=3.28


[110-141]:
1ako0_PU3_110-141
CI=1.12


[142-163]:
1ako0_PU3_142-163
CI=0.17


[164-193]:
1ako0_PU3_164-193
CI=0.37


[194-268 ]:
1ako0_PU3_194-268
CI=3.86


Level 4
PU
Molecule needs Java 1.4 Structure


[1-71]:
1ako0_PU4_1-71
CI=4.19


[72-109]:
1ako0_PU4_72-109
CI=3.28


[110-141]:
1ako0_PU4_110-141
CI=1.12


[142-163]:
1ako0_PU4_142-163
CI=0.17


[164-193]:
1ako0_PU4_164-193
CI=0.37


[194-211]:
1ako0_PU4_194-211
CI=0.10


[212-227]:
1ako0_PU4_212-227
CI=1.74


[228-268 ]:
1ako0_PU4_228-268
CI=2.34


Level 5
PU
Molecule needs Java 1.4 Structure


[1-33]:
1ako0_PU5_1-33
CI=2.02


[34-71]:
1ako0_PU5_34-71
CI=3.53


[72-109]:
1ako0_PU5_72-109
CI=3.28


[110-141]:
1ako0_PU5_110-141
CI=1.12


[142-163]:
1ako0_PU5_142-163
CI=0.17


[164-193]:
1ako0_PU5_164-193
CI=0.37


[194-211]:
1ako0_PU5_194-211
CI=0.10


[212-227]:
1ako0_PU5_212-227
CI=1.74


[228-268 ]:
1ako0_PU5_228-268
CI=2.34


Level 6
PU
Molecule needs Java 1.4 Structure


[1-33]:
1ako0_PU6_1-33
CI=2.02


[34-71]:
1ako0_PU6_34-71
CI=3.53


[72-109]:
1ako0_PU6_72-109
CI=3.28


[110-141]:
1ako0_PU6_110-141
CI=1.12


[142-163]:
1ako0_PU6_142-163
CI=0.17


[164-193]:
1ako0_PU6_164-193
CI=0.37


[194-211]:
1ako0_PU6_194-211
CI=0.10


[212-227]:
1ako0_PU6_212-227
CI=1.74


[228-245]:
1ako0_PU6_228-245
CI=0.00


[246-268 ]:
1ako0_PU6_246-268
CI=1.39


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1ako0_PU7_1-33
CI=2.02


[34-71]:
1ako0_PU7_34-71
CI=3.53


[72-89]:
1ako0_PU7_72-89
CI=0.81


[90-109]:
1ako0_PU7_90-109
CI=2.54


[110-141]:
1ako0_PU7_110-141
CI=1.12


[142-163]:
1ako0_PU7_142-163
CI=0.17


[164-193]:
1ako0_PU7_164-193
CI=0.37


[194-211]:
1ako0_PU7_194-211
CI=0.10


[212-227]:
1ako0_PU7_212-227
CI=1.74


[228-245]:
1ako0_PU7_228-245
CI=0.00


[246-268 ]:
1ako0_PU7_246-268
CI=1.39


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1ako0_PU8_1-33
CI=2.02


[34-51]:
1ako0_PU8_34-51
CI=0.00


[52-71]:
1ako0_PU8_52-71
CI=2.36


[72-89]:
1ako0_PU8_72-89
CI=0.81


[90-109]:
1ako0_PU8_90-109
CI=2.54


[110-141]:
1ako0_PU8_110-141
CI=1.12


[142-163]:
1ako0_PU8_142-163
CI=0.17


[164-193]:
1ako0_PU8_164-193
CI=0.37


[194-211]:
1ako0_PU8_194-211
CI=0.10


[212-227]:
1ako0_PU8_212-227
CI=1.74


[228-245]:
1ako0_PU8_228-245
CI=0.00


[246-268 ]:
1ako0_PU8_246-268
CI=1.39


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ako0_PU_1-17
CI=0.11


[18-33]:
1ako0_PU_18-33
CI=0.00


[34-51]:
1ako0_PU_34-51
CI=0.00


[52-71]:
1ako0_PU_52-71
CI=2.36


[72-89]:
1ako0_PU_72-89
CI=0.81


[90-109]:
1ako0_PU_90-109
CI=2.54


[110-141]:
1ako0_PU_110-141
CI=1.12


[142-163]:
1ako0_PU_142-163
CI=0.17


[164-193]:
1ako0_PU_164-193
CI=0.37


[194-211]:
1ako0_PU_194-211
CI=0.10


[212-227]:
1ako0_PU_212-227
CI=1.74


[228-245]:
1ako0_PU_228-245
CI=0.00


[246-268 ]:
1ako0_PU_246-268
CI=1.39