Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-112]:
1anf0_PU0_1-112
CI=2.74


[113-257]:
1anf0_PU0_113-257
CI=3.78


[258-370 ]:
1anf0_PU0_258-370
CI=1.14


Level 1
PU
Molecule needs Java 1.4 Structure


[1-112]:
1anf0_PU1_1-112
CI=2.74


[113-257]:
1anf0_PU1_113-257
CI=3.78


[258-332]:
1anf0_PU1_258-332
CI=1.12


[333-370 ]:
1anf0_PU1_333-370
CI=1.14


Level 2
PU
Molecule needs Java 1.4 Structure


[1-62]:
1anf0_PU2_1-62
CI=3.22


[63-112]:
1anf0_PU2_63-112
CI=1.86


[113-257]:
1anf0_PU2_113-257
CI=3.78


[258-332]:
1anf0_PU2_258-332
CI=1.12


[333-370 ]:
1anf0_PU2_333-370
CI=1.14


Level 3
PU
Molecule needs Java 1.4 Structure


[1-62]:
1anf0_PU3_1-62
CI=3.22


[63-112]:
1anf0_PU3_63-112
CI=1.86


[113-165]:
1anf0_PU3_113-165
CI=0.71


[166-185]:
1anf0_PU3_166-185
CI=2.26


[186-257]:
1anf0_PU3_186-257
CI=0.85


[258-332]:
1anf0_PU3_258-332
CI=1.12


[333-370 ]:
1anf0_PU3_333-370
CI=1.14


Level 4
PU
Molecule needs Java 1.4 Structure


[1-62]:
1anf0_PU4_1-62
CI=3.22


[63-112]:
1anf0_PU4_63-112
CI=1.86


[113-165]:
1anf0_PU4_113-165
CI=0.71


[166-185]:
1anf0_PU4_166-185
CI=2.26


[186-206]:
1anf0_PU4_186-206
CI=0.36


[207-245]:
1anf0_PU4_207-245
CI=0.83


[246-257]:
1anf0_PU4_246-257
CI=1.34


[258-332]:
1anf0_PU4_258-332
CI=1.12


[333-370 ]:
1anf0_PU4_333-370
CI=1.14


Level 5
PU
Molecule needs Java 1.4 Structure


[1-62]:
1anf0_PU5_1-62
CI=3.22


[63-112]:
1anf0_PU5_63-112
CI=1.86


[113-148]:
1anf0_PU5_113-148
CI=0.68


[149-165]:
1anf0_PU5_149-165
CI=0.43


[166-185]:
1anf0_PU5_166-185
CI=2.26


[186-206]:
1anf0_PU5_186-206
CI=0.36


[207-245]:
1anf0_PU5_207-245
CI=0.83


[246-257]:
1anf0_PU5_246-257
CI=1.34


[258-332]:
1anf0_PU5_258-332
CI=1.12


[333-370 ]:
1anf0_PU5_333-370
CI=1.14


Level 6
PU
Molecule needs Java 1.4 Structure


[1-62]:
1anf0_PU6_1-62
CI=3.22


[63-112]:
1anf0_PU6_63-112
CI=1.86


[113-148]:
1anf0_PU6_113-148
CI=0.68


[149-165]:
1anf0_PU6_149-165
CI=0.43


[166-185]:
1anf0_PU6_166-185
CI=2.26


[186-206]:
1anf0_PU6_186-206
CI=0.36


[207-245]:
1anf0_PU6_207-245
CI=0.83


[246-257]:
1anf0_PU6_246-257
CI=1.34


[258-283]:
1anf0_PU6_258-283
CI=0.21


[284-322]:
1anf0_PU6_284-322
CI=1.26


[323-332]:
1anf0_PU6_323-332
CI=0.00


[333-370 ]:
1anf0_PU6_333-370
CI=1.14


Level 7
PU
Molecule needs Java 1.4 Structure


[1-62]:
1anf0_PU7_1-62
CI=3.22


[63-112]:
1anf0_PU7_63-112
CI=1.86


[113-129]:
1anf0_PU7_113-129
CI=0.11


[130-148]:
1anf0_PU7_130-148
CI=0.87


[149-165]:
1anf0_PU7_149-165
CI=0.43


[166-185]:
1anf0_PU7_166-185
CI=2.26


[186-206]:
1anf0_PU7_186-206
CI=0.36


[207-245]:
1anf0_PU7_207-245
CI=0.83


[246-257]:
1anf0_PU7_246-257
CI=1.34


[258-283]:
1anf0_PU7_258-283
CI=0.21


[284-322]:
1anf0_PU7_284-322
CI=1.26


[323-332]:
1anf0_PU7_323-332
CI=0.00


[333-370 ]:
1anf0_PU7_333-370
CI=1.14


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1anf0_PU_1-17
CI=0.32


[18-37]:
1anf0_PU_18-37
CI=1.95


[38-62]:
1anf0_PU_38-62
CI=0.59


[63-112]:
1anf0_PU_63-112
CI=1.86


[113-129]:
1anf0_PU_113-129
CI=0.11


[130-148]:
1anf0_PU_130-148
CI=0.87


[149-165]:
1anf0_PU_149-165
CI=0.43


[166-185]:
1anf0_PU_166-185
CI=2.26


[186-206]:
1anf0_PU_186-206
CI=0.36


[207-245]:
1anf0_PU_207-245
CI=0.83


[246-257]:
1anf0_PU_246-257
CI=1.34


[258-283]:
1anf0_PU_258-283
CI=0.21


[284-322]:
1anf0_PU_284-322
CI=1.26


[323-332]:
1anf0_PU_323-332
CI=0.00


[333-370 ]:
1anf0_PU_333-370
CI=1.14