Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1at00_PU0_1-50
CI=2.92


[51-117]:
1at00_PU0_51-117
CI=4.91


[118-142 ]:
1at00_PU0_118-142
CI=1.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1at00_PU1_1-21
CI=2.48


[22-50]:
1at00_PU1_22-50
CI=1.85


[51-117]:
1at00_PU1_51-117
CI=4.91


[118-142 ]:
1at00_PU1_118-142
CI=1.52


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1at00_PU_1-21
CI=2.48


[22-50]:
1at00_PU_22-50
CI=1.85


[51-68]:
1at00_PU_51-68
CI=2.28


[69-90]:
1at00_PU_69-90
CI=2.64


[91-117]:
1at00_PU_91-117
CI=2.62


[118-142 ]:
1at00_PU_118-142
CI=1.52