Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-45]:
1b9wa_PU0_1-45
CI=3.04


[46-89 ]:
1b9wa_PU0_46-89
CI=4.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1b9wa_PU1_1-29
CI=2.23


[30-45]:
1b9wa_PU1_30-45
CI=1.87


[46-89 ]:
1b9wa_PU1_46-89
CI=4.38


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-29]:
1b9wa_PU_1-29
CI=2.23


[30-45]:
1b9wa_PU_30-45
CI=1.87


[46-72]:
1b9wa_PU_46-72
CI=3.34


[73-89 ]:
1b9wa_PU_73-89
CI=2.38