Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-145]:
1bdma_PU0_1-145
CI=4.15


[146-305]:
1bdma_PU0_146-305
CI=3.66


[306-317 ]:
1bdma_PU0_306-317
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-85]:
1bdma_PU1_1-85
CI=3.88


[86-145]:
1bdma_PU1_86-145
CI=2.76


[146-305]:
1bdma_PU1_146-305
CI=3.66


[306-317 ]:
1bdma_PU1_306-317
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-85]:
1bdma_PU2_1-85
CI=3.88


[86-145]:
1bdma_PU2_86-145
CI=2.76


[146-213]:
1bdma_PU2_146-213
CI=2.68


[214-229]:
1bdma_PU2_214-229
CI=0.93


[230-305]:
1bdma_PU2_230-305
CI=2.67


[306-317 ]:
1bdma_PU2_306-317
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-85]:
1bdma_PU3_1-85
CI=3.88


[86-145]:
1bdma_PU3_86-145
CI=2.76


[146-213]:
1bdma_PU3_146-213
CI=2.68


[214-229]:
1bdma_PU3_214-229
CI=0.93


[230-287]:
1bdma_PU3_230-287
CI=3.26


[288-305]:
1bdma_PU3_288-305
CI=0.00


[306-317 ]:
1bdma_PU3_306-317
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-85]:
1bdma_PU4_1-85
CI=3.88


[86-145]:
1bdma_PU4_86-145
CI=2.76


[146-213]:
1bdma_PU4_146-213
CI=2.68


[214-229]:
1bdma_PU4_214-229
CI=0.93


[230-250]:
1bdma_PU4_230-250
CI=0.00


[251-287]:
1bdma_PU4_251-287
CI=3.42


[288-305]:
1bdma_PU4_288-305
CI=0.00


[306-317 ]:
1bdma_PU4_306-317
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-42]:
1bdma_PU5_1-42
CI=2.60


[43-61]:
1bdma_PU5_43-61
CI=0.00


[62-85]:
1bdma_PU5_62-85
CI=0.31


[86-145]:
1bdma_PU5_86-145
CI=2.76


[146-213]:
1bdma_PU5_146-213
CI=2.68


[214-229]:
1bdma_PU5_214-229
CI=0.93


[230-250]:
1bdma_PU5_230-250
CI=0.00


[251-287]:
1bdma_PU5_251-287
CI=3.42


[288-305]:
1bdma_PU5_288-305
CI=0.00


[306-317 ]:
1bdma_PU5_306-317
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-42]:
1bdma_PU6_1-42
CI=2.60


[43-61]:
1bdma_PU6_43-61
CI=0.00


[62-85]:
1bdma_PU6_62-85
CI=0.31


[86-145]:
1bdma_PU6_86-145
CI=2.76


[146-184]:
1bdma_PU6_146-184
CI=2.00


[185-213]:
1bdma_PU6_185-213
CI=0.84


[214-229]:
1bdma_PU6_214-229
CI=0.93


[230-250]:
1bdma_PU6_230-250
CI=0.00


[251-287]:
1bdma_PU6_251-287
CI=3.42


[288-305]:
1bdma_PU6_288-305
CI=0.00


[306-317 ]:
1bdma_PU6_306-317
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-42]:
1bdma_PU7_1-42
CI=2.60


[43-61]:
1bdma_PU7_43-61
CI=0.00


[62-85]:
1bdma_PU7_62-85
CI=0.31


[86-102]:
1bdma_PU7_86-102
CI=0.46


[103-145]:
1bdma_PU7_103-145
CI=2.26


[146-184]:
1bdma_PU7_146-184
CI=2.00


[185-213]:
1bdma_PU7_185-213
CI=0.84


[214-229]:
1bdma_PU7_214-229
CI=0.93


[230-250]:
1bdma_PU7_230-250
CI=0.00


[251-287]:
1bdma_PU7_251-287
CI=3.42


[288-305]:
1bdma_PU7_288-305
CI=0.00


[306-317 ]:
1bdma_PU7_306-317
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-42]:
1bdma_PU8_1-42
CI=2.60


[43-61]:
1bdma_PU8_43-61
CI=0.00


[62-85]:
1bdma_PU8_62-85
CI=0.31


[86-102]:
1bdma_PU8_86-102
CI=0.46


[103-145]:
1bdma_PU8_103-145
CI=2.26


[146-164]:
1bdma_PU8_146-164
CI=0.00


[165-184]:
1bdma_PU8_165-184
CI=1.03


[185-213]:
1bdma_PU8_185-213
CI=0.84


[214-229]:
1bdma_PU8_214-229
CI=0.93


[230-250]:
1bdma_PU8_230-250
CI=0.00


[251-287]:
1bdma_PU8_251-287
CI=3.42


[288-305]:
1bdma_PU8_288-305
CI=0.00


[306-317 ]:
1bdma_PU8_306-317
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-42]:
1bdma_PU_1-42
CI=2.60


[43-61]:
1bdma_PU_43-61
CI=0.00


[62-85]:
1bdma_PU_62-85
CI=0.31


[86-102]:
1bdma_PU_86-102
CI=0.46


[103-119]:
1bdma_PU_103-119
CI=0.21


[120-145]:
1bdma_PU_120-145
CI=0.87


[146-164]:
1bdma_PU_146-164
CI=0.00


[165-184]:
1bdma_PU_165-184
CI=1.03


[185-213]:
1bdma_PU_185-213
CI=0.84


[214-229]:
1bdma_PU_214-229
CI=0.93


[230-250]:
1bdma_PU_230-250
CI=0.00


[251-287]:
1bdma_PU_251-287
CI=3.42


[288-305]:
1bdma_PU_288-305
CI=0.00


[306-317 ]:
1bdma_PU_306-317
CI=0.00