Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-71]:
1bkb0_PU0_1-71
CI=4.75


[72-132 ]:
1bkb0_PU0_72-132
CI=4.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1bkb0_PU1_1-28
CI=1.35


[29-63]:
1bkb0_PU1_29-63
CI=3.29


[64-71]:
1bkb0_PU1_64-71
CI=0.00


[72-132 ]:
1bkb0_PU1_72-132
CI=4.69


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-28]:
1bkb0_PU_1-28
CI=1.35


[29-63]:
1bkb0_PU_29-63
CI=3.29


[64-71]:
1bkb0_PU_64-71
CI=0.00


[72-100]:
1bkb0_PU_72-100
CI=2.93


[101-132 ]:
1bkb0_PU_101-132
CI=2.93