Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-53]:
1bqca_PU0_1-53
CI=2.37


[54-196]:
1bqca_PU0_54-196
CI=4.11


[197-302 ]:
1bqca_PU0_197-302
CI=3.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU1_1-20
CI=2.34


[21-53]:
1bqca_PU1_21-53
CI=2.31


[54-196]:
1bqca_PU1_54-196
CI=4.11


[197-302 ]:
1bqca_PU1_197-302
CI=3.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU2_1-20
CI=2.34


[21-53]:
1bqca_PU2_21-53
CI=2.31


[54-196]:
1bqca_PU2_54-196
CI=4.11


[197-254]:
1bqca_PU2_197-254
CI=2.97


[255-302 ]:
1bqca_PU2_255-302
CI=2.12


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU3_1-20
CI=2.34


[21-53]:
1bqca_PU3_21-53
CI=2.31


[54-196]:
1bqca_PU3_54-196
CI=4.11


[197-254]:
1bqca_PU3_197-254
CI=2.97


[255-277]:
1bqca_PU3_255-277
CI=2.46


[278-302 ]:
1bqca_PU3_278-302
CI=0.75


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU4_1-20
CI=2.34


[21-53]:
1bqca_PU4_21-53
CI=2.31


[54-127]:
1bqca_PU4_54-127
CI=2.78


[128-196]:
1bqca_PU4_128-196
CI=3.07


[197-254]:
1bqca_PU4_197-254
CI=2.97


[255-277]:
1bqca_PU4_255-277
CI=2.46


[278-302 ]:
1bqca_PU4_278-302
CI=0.75


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU5_1-20
CI=2.34


[21-53]:
1bqca_PU5_21-53
CI=2.31


[54-78]:
1bqca_PU5_54-78
CI=0.53


[79-127]:
1bqca_PU5_79-127
CI=2.43


[128-196]:
1bqca_PU5_128-196
CI=3.07


[197-254]:
1bqca_PU5_197-254
CI=2.97


[255-277]:
1bqca_PU5_255-277
CI=2.46


[278-302 ]:
1bqca_PU5_278-302
CI=0.75


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU6_1-20
CI=2.34


[21-53]:
1bqca_PU6_21-53
CI=2.31


[54-78]:
1bqca_PU6_54-78
CI=0.53


[79-127]:
1bqca_PU6_79-127
CI=2.43


[128-145]:
1bqca_PU6_128-145
CI=0.51


[146-162]:
1bqca_PU6_146-162
CI=0.11


[163-196]:
1bqca_PU6_163-196
CI=1.78


[197-254]:
1bqca_PU6_197-254
CI=2.97


[255-277]:
1bqca_PU6_255-277
CI=2.46


[278-302 ]:
1bqca_PU6_278-302
CI=0.75


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU7_1-20
CI=2.34


[21-53]:
1bqca_PU7_21-53
CI=2.31


[54-78]:
1bqca_PU7_54-78
CI=0.53


[79-127]:
1bqca_PU7_79-127
CI=2.43


[128-145]:
1bqca_PU7_128-145
CI=0.51


[146-162]:
1bqca_PU7_146-162
CI=0.11


[163-179]:
1bqca_PU7_163-179
CI=0.97


[180-196]:
1bqca_PU7_180-196
CI=0.42


[197-254]:
1bqca_PU7_197-254
CI=2.97


[255-277]:
1bqca_PU7_255-277
CI=2.46


[278-302 ]:
1bqca_PU7_278-302
CI=0.75


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU8_1-20
CI=2.34


[21-53]:
1bqca_PU8_21-53
CI=2.31


[54-78]:
1bqca_PU8_54-78
CI=0.53


[79-127]:
1bqca_PU8_79-127
CI=2.43


[128-145]:
1bqca_PU8_128-145
CI=0.51


[146-162]:
1bqca_PU8_146-162
CI=0.11


[163-179]:
1bqca_PU8_163-179
CI=0.97


[180-196]:
1bqca_PU8_180-196
CI=0.42


[197-219]:
1bqca_PU8_197-219
CI=0.08


[220-254]:
1bqca_PU8_220-254
CI=2.34


[255-277]:
1bqca_PU8_255-277
CI=2.46


[278-302 ]:
1bqca_PU8_278-302
CI=0.75


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU9_1-20
CI=2.34


[21-53]:
1bqca_PU9_21-53
CI=2.31


[54-78]:
1bqca_PU9_54-78
CI=0.53


[79-103]:
1bqca_PU9_79-103
CI=1.14


[104-127]:
1bqca_PU9_104-127
CI=0.30


[128-145]:
1bqca_PU9_128-145
CI=0.51


[146-162]:
1bqca_PU9_146-162
CI=0.11


[163-179]:
1bqca_PU9_163-179
CI=0.97


[180-196]:
1bqca_PU9_180-196
CI=0.42


[197-219]:
1bqca_PU9_197-219
CI=0.08


[220-254]:
1bqca_PU9_220-254
CI=2.34


[255-277]:
1bqca_PU9_255-277
CI=2.46


[278-302 ]:
1bqca_PU9_278-302
CI=0.75


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqca_PU_1-20
CI=2.34


[21-53]:
1bqca_PU_21-53
CI=2.31


[54-78]:
1bqca_PU_54-78
CI=0.53


[79-103]:
1bqca_PU_79-103
CI=1.14


[104-127]:
1bqca_PU_104-127
CI=0.30


[128-145]:
1bqca_PU_128-145
CI=0.51


[146-162]:
1bqca_PU_146-162
CI=0.11


[163-179]:
1bqca_PU_163-179
CI=0.97


[180-196]:
1bqca_PU_180-196
CI=0.42


[197-219]:
1bqca_PU_197-219
CI=0.08


[220-237]:
1bqca_PU_220-237
CI=1.25


[238-254]:
1bqca_PU_238-254
CI=0.42


[255-277]:
1bqca_PU_255-277
CI=2.46


[278-302 ]:
1bqca_PU_278-302
CI=0.75