Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1btea_PU0_1-27
CI=2.53


[28-92 ]:
1btea_PU0_28-92
CI=5.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1btea_PU1_1-27
CI=2.53


[28-54]:
1btea_PU1_28-54
CI=2.82


[55-92 ]:
1btea_PU1_55-92
CI=4.06


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-27]:
1btea_PU_1-27
CI=2.53


[28-54]:
1btea_PU_28-54
CI=2.82


[55-76]:
1btea_PU_55-76
CI=2.71


[77-92 ]:
1btea_PU_77-92
CI=0.00