Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-91]:
1c7ka_PU0_1-91
CI=4.65


[92-121]:
1c7ka_PU0_92-121
CI=2.78


[122-132 ]:
1c7ka_PU0_122-132
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c7ka_PU1_1-40
CI=2.53


[41-91]:
1c7ka_PU1_41-91
CI=4.21


[92-121]:
1c7ka_PU1_92-121
CI=2.78


[122-132 ]:
1c7ka_PU1_122-132
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c7ka_PU2_1-40
CI=2.53


[41-71]:
1c7ka_PU2_41-71
CI=4.22


[72-91]:
1c7ka_PU2_72-91
CI=0.18


[92-121]:
1c7ka_PU2_92-121
CI=2.78


[122-132 ]:
1c7ka_PU2_122-132
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1c7ka_PU_1-21
CI=0.53


[22-40]:
1c7ka_PU_22-40
CI=1.27


[41-71]:
1c7ka_PU_41-71
CI=4.22


[72-91]:
1c7ka_PU_72-91
CI=0.18


[92-121]:
1c7ka_PU_92-121
CI=2.78


[122-132 ]:
1c7ka_PU_122-132
CI=0.00