Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-70]:
1cdle_PU0_1-70
CI=2.06


[71-142 ]:
1cdle_PU0_71-142
CI=1.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1cdle_PU1_1-24
CI=0.62


[25-47]:
1cdle_PU1_25-47
CI=1.04


[48-70]:
1cdle_PU1_48-70
CI=1.46


[71-142 ]:
1cdle_PU1_71-142
CI=1.91


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1cdle_PU_1-24
CI=0.62


[25-47]:
1cdle_PU_25-47
CI=1.04


[48-70]:
1cdle_PU_48-70
CI=1.46


[71-97]:
1cdle_PU_71-97
CI=0.56


[98-120]:
1cdle_PU_98-120
CI=0.72


[121-142 ]:
1cdle_PU_121-142
CI=1.26