Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1cqma_PU0_1-43
CI=0.47


[44-59]:
1cqma_PU0_44-59
CI=2.20


[60-98 ]:
1cqma_PU0_60-98
CI=0.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1cqma_PU1_1-25
CI=0.22


[26-43]:
1cqma_PU1_26-43
CI=0.50


[44-59]:
1cqma_PU1_44-59
CI=2.20


[60-98 ]:
1cqma_PU1_60-98
CI=0.58


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1cqma_PU_1-25
CI=0.22


[26-43]:
1cqma_PU_26-43
CI=0.50


[44-59]:
1cqma_PU_44-59
CI=2.20


[60-76]:
1cqma_PU_60-76
CI=0.00


[77-98 ]:
1cqma_PU_77-98
CI=0.42