Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-246]:
1cs1a_PU0_1-246
CI=4.35


[247-383 ]:
1cs1a_PU0_247-383
CI=3.74


Level 1
PU
Molecule needs Java 1.4 Structure


[1-81]:
1cs1a_PU1_1-81
CI=1.71


[82-170]:
1cs1a_PU1_82-170
CI=3.36


[171-246]:
1cs1a_PU1_171-246
CI=2.56


[247-383 ]:
1cs1a_PU1_247-383
CI=3.74


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1cs1a_PU2_1-25
CI=1.34


[26-49]:
1cs1a_PU2_26-49
CI=1.65


[50-81]:
1cs1a_PU2_50-81
CI=0.95


[82-170]:
1cs1a_PU2_82-170
CI=3.36


[171-246]:
1cs1a_PU2_171-246
CI=2.56


[247-383 ]:
1cs1a_PU2_247-383
CI=3.74


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1cs1a_PU3_1-25
CI=1.34


[26-49]:
1cs1a_PU3_26-49
CI=1.65


[50-81]:
1cs1a_PU3_50-81
CI=0.95


[82-170]:
1cs1a_PU3_82-170
CI=3.36


[171-246]:
1cs1a_PU3_171-246
CI=2.56


[247-274]:
1cs1a_PU3_247-274
CI=0.47


[275-293]:
1cs1a_PU3_275-293
CI=1.56


[294-383 ]:
1cs1a_PU3_294-383
CI=3.26


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1cs1a_PU4_1-25
CI=1.34


[26-49]:
1cs1a_PU4_26-49
CI=1.65


[50-81]:
1cs1a_PU4_50-81
CI=0.95


[82-170]:
1cs1a_PU4_82-170
CI=3.36


[171-246]:
1cs1a_PU4_171-246
CI=2.56


[247-274]:
1cs1a_PU4_247-274
CI=0.47


[275-293]:
1cs1a_PU4_275-293
CI=1.56


[294-338]:
1cs1a_PU4_294-338
CI=1.23


[339-354]:
1cs1a_PU4_339-354
CI=0.55


[355-383 ]:
1cs1a_PU4_355-383
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1cs1a_PU5_1-25
CI=1.34


[26-49]:
1cs1a_PU5_26-49
CI=1.65


[50-81]:
1cs1a_PU5_50-81
CI=0.95


[82-170]:
1cs1a_PU5_82-170
CI=3.36


[171-246]:
1cs1a_PU5_171-246
CI=2.56


[247-274]:
1cs1a_PU5_247-274
CI=0.47


[275-293]:
1cs1a_PU5_275-293
CI=1.56


[294-315]:
1cs1a_PU5_294-315
CI=0.17


[316-338]:
1cs1a_PU5_316-338
CI=2.12


[339-354]:
1cs1a_PU5_339-354
CI=0.55


[355-383 ]:
1cs1a_PU5_355-383
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1cs1a_PU6_1-25
CI=1.34


[26-49]:
1cs1a_PU6_26-49
CI=1.65


[50-81]:
1cs1a_PU6_50-81
CI=0.95


[82-170]:
1cs1a_PU6_82-170
CI=3.36


[171-205]:
1cs1a_PU6_171-205
CI=1.89


[206-230]:
1cs1a_PU6_206-230
CI=0.44


[231-246]:
1cs1a_PU6_231-246
CI=0.00


[247-274]:
1cs1a_PU6_247-274
CI=0.47


[275-293]:
1cs1a_PU6_275-293
CI=1.56


[294-315]:
1cs1a_PU6_294-315
CI=0.17


[316-338]:
1cs1a_PU6_316-338
CI=2.12


[339-354]:
1cs1a_PU6_339-354
CI=0.55


[355-383 ]:
1cs1a_PU6_355-383
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-25]:
1cs1a_PU_1-25
CI=1.34


[26-49]:
1cs1a_PU_26-49
CI=1.65


[50-81]:
1cs1a_PU_50-81
CI=0.95


[82-120]:
1cs1a_PU_82-120
CI=2.58


[121-170]:
1cs1a_PU_121-170
CI=1.94


[171-205]:
1cs1a_PU_171-205
CI=1.89


[206-230]:
1cs1a_PU_206-230
CI=0.44


[231-246]:
1cs1a_PU_231-246
CI=0.00


[247-274]:
1cs1a_PU_247-274
CI=0.47


[275-293]:
1cs1a_PU_275-293
CI=1.56


[294-315]:
1cs1a_PU_294-315
CI=0.17


[316-338]:
1cs1a_PU_316-338
CI=2.12


[339-354]:
1cs1a_PU_339-354
CI=0.55


[355-383 ]:
1cs1a_PU_355-383
CI=0.00