Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-92]:
1d7pm_PU0_1-92
CI=3.01


[93-111]:
1d7pm_PU0_93-111
CI=1.38


[112-159 ]:
1d7pm_PU0_112-159
CI=0.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-76]:
1d7pm_PU1_1-76
CI=3.34


[77-92]:
1d7pm_PU1_77-92
CI=0.82


[93-111]:
1d7pm_PU1_93-111
CI=1.38


[112-159 ]:
1d7pm_PU1_112-159
CI=0.70


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d7pm_PU2_1-22
CI=0.42


[23-60]:
1d7pm_PU2_23-60
CI=3.15


[61-76]:
1d7pm_PU2_61-76
CI=0.00


[77-92]:
1d7pm_PU2_77-92
CI=0.82


[93-111]:
1d7pm_PU2_93-111
CI=1.38


[112-159 ]:
1d7pm_PU2_112-159
CI=0.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d7pm_PU3_1-22
CI=0.42


[23-60]:
1d7pm_PU3_23-60
CI=3.15


[61-76]:
1d7pm_PU3_61-76
CI=0.00


[77-92]:
1d7pm_PU3_77-92
CI=0.82


[93-111]:
1d7pm_PU3_93-111
CI=1.38


[112-130]:
1d7pm_PU3_112-130
CI=0.86


[131-159 ]:
1d7pm_PU3_131-159
CI=0.50


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-22]:
1d7pm_PU_1-22
CI=0.42


[23-39]:
1d7pm_PU_23-39
CI=1.19


[40-60]:
1d7pm_PU_40-60
CI=0.43


[61-76]:
1d7pm_PU_61-76
CI=0.00


[77-92]:
1d7pm_PU_77-92
CI=0.82


[93-111]:
1d7pm_PU_93-111
CI=1.38


[112-130]:
1d7pm_PU_112-130
CI=0.86


[131-159 ]:
1d7pm_PU_131-159
CI=0.50